Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866140:139866161:[+] chr2:53937345:53937364:[-] nonBSJ supported Intron

circRNA 5':UCCAGACUAUCCAUGUCUUCCA 3'


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target  3':CGGUCUGUC--GUACAGAAGGG 5'

 -25.90 1 RIC-seq
chrX:139866266:139866287:[+] chr2:53937345:53937364:[-] nonBSJ supported Intron

circRNA 5':UCCAGACUAUCCAUGUCUUCCA 3'


            |||||| ||||||||||


target  3':CGGUCUGUC--GUACAGAAGGG 5'

 -25.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:53937345:53937364:[-] target - chr2:53937350-53937351 A>G PRAD-CA ICGC