Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865669:139865698:[+] chr18:67513275:67513304:[+] nonBSJ supported 3UTR

circRNA 5':CCAUGUCUUCCAGA-AAAAUCUGUGUCUUCC 3'


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target  3':CGUCCAGAC-GUCUCUUUUACACCCGUUAGA 5'

 -12.50 1 RIC-seq
chrX:139865669:139865700:[+] chr18:67513270:67513304:[+] nonBSJ supported 3UTR

circRNA 5':CCAUGUCUUCCAGAAAAAUCUGUG-----UCUUCCAC 3'


            || |||| |||| ||| |||| |||||||


target  3':CGUCCAGAC-GUCUCUUUU-ACACCCGUUAGAAGGUU 5'

 -20.00 41 RIC-seq
chrX:139865717:139865738:[+] chr18:67513269:67513305:[+] nonBSJ supported 3UTR

circRNA 5':AGUAAAUCUAGU-----------------UCUUCCAGAA 3'


            |:| ||| |: |||||||:|


target  3':CCGUCCAGA-CGUCUCUUUUACACCCGUUAGAAGGUUU 5'

 -12.20 1 RIC-seq