Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865660:139865696:[+] chr17:44105135:44105162:[+] nonBSJ supported 3UTR

circRNA 5':CCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUU 3'


            |||| ||| | ||||| ||||:


target  3':CGUCGUCC-GGUUUCGUUGGUCU--------ACAGGU 5'

 -19.00 44 RIC-seq
chrX:139866348:139866390:[+] chr17:44064408:44064448:[+] nonBSJ supported CDS

circRNA 5':CCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAA---GCCAUGUC 3'


            |:| ||||||| ||| |||||| :|||||:


target  3':AGUAGCGAAGGUC----AGG-GCAGAAACGAAAAUGACUGGUACGC 5'

 -31.10 22 RIC-seq
chrX:139866476:139866505:[+] chr17:44064435:44064451:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGA 3'


            |||| || |||||||


target  3':AACAGUA------------GC-GAAGGUCA 5'

 -13.50 2 RIC-seq
chrX:139866476:139866512:[+] chr17:44064433:44064451:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCA 3'


            |||| || ||||||| |||


target  3':AACAGUA------------GC-GAAGGUC----AGG 5'

 -15.70 9 RIC-seq
chrX:139866476:139866515:[+] chr17:44064431:44064451:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGU 3'


            |||| || ||||||| ||| ||


target  3':AACAGUA------------GC-GAAGGUC----AGG-GC 5'

 -16.50 17 RIC-seq