Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865512:139865538:[+] chrX:92926927:92926956:[-] nonBSJ supported CDS

circRNA 5': UCUUCCAGUAAAUCAAGUCUUCCAG-CA 3'


            ||||| || || ||: |:|||: ||


target  3':UAGAAGAGCACCAAGGUCGAAGGGUUAGUA 5'

 -15.70 2 RIC-seq
chrX:139865512:139865539:[+] chrX:92926927:92926956:[-] nonBSJ supported CDS

circRNA 5': UCUUCCAGUAAAUCAAGUCUUCCAG-CAA 3'


            ||||| || || ||: |:|||: ||


target  3':UAGAAGAGCACCAAGGUCGAAGGGUUAGUA 5'

 -16.20 19 RIC-seq
chrX:139866621:139866637:[+] chrX:92927177:92927194:[-] nonBSJ supported CDS

circRNA 5':GGUCUU--CCAGCAUCUCC 3'


            ||||| ||||||:|||


target  3': CAGAAGUGGUCGUGGAGU 5'

 -21.40 1 RIC-seq
chrX:139866675:139866698:[+] chrX:92927177:92927200:[-] nonBSJ supported CDS

circRNA 5':CGUCUU--CCAGCAUCUCUGUGUCUU 3'


            ||||| ||||||:||| |||


target  3': CAGAAGUGGUCGUGGAGUAA-AGAC 5'

 -23.50 31 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:92927177:92927200:[-] target - chrX:92927200-92927201 G>T COCA-CN ICGC