Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866003:139866043:[+] chr5:76987291:76987324:[-] nonBSJ supported CDS

circRNA 5':CUCC-CAGUCUUCCAGAAAAUCCACGUCUUCCCAACAAUCCA 3'


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target  3':AAGGAGUC-GAAGA------AGGUUCAGAAAAAGUAAAAGG 5'

 -22.00 28 RIC-seq
chrX:139866316:139866339:[+] chr5:76987296:76987314:[-] nonBSJ supported CDS

circRNA 5': AGCUUCCGAAAAAUCCAGGUCUUC 3'


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target  3':GUCGAAGA------AGGUUCAGAAA 5'

 -19.30 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866339:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC