Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866476:139866516:[+] chr19:3980005:3980042:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUC 3'


           |||| |:|| || ||||:||:||:|| |||||||


target  3':UACA-AGGG-UG-UUCCGUGUAGGAGCUACCCGAGGUGCAU 5'

 -37.10 1 RIC-seq
chrX:139866476:139866528:[+] chr19:3980005:3980059:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCU---UCCAAC--CAAGC 3'


           |||| |:|| || ||||:||:||:|| ||||||| :||| ||||


target  3':UACA-AGGG-UG-UUCCGUGUAGGAGCUACCCGAGGUGCAUCGCCGGGUAGUAGUUCU 5'

 -40.40 2 RIC-seq
chrX:139866476:139866533:[+] chr19:3980005:3980064:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCU---UCCAAC--CAAGCCAUGU 3'


           |||| |:|| || ||||:||:||:|| ||||||| :||| |||| |||


target  3':UACA-AGGG-UG-UUCCGUGUAGGAGCUACCCGAGGUGCAUCGCCGGGUAGUAGUUCUA-ACAA 5'

 -40.70 19 RIC-seq
chrX:139866480:139866528:[+] chr19:3980007:3980059:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCU---UCCAAC--CAAGC 3'


            |||| || ||||:||:||:|| ||||||| :||| ||||


target  3':CAAGGGUG-UUCCGUGUAGGAGCUACCCGAGGUGCAUCGCCGGGUAGUAGUUCU 5'

 -39.60 1 RIC-seq
chrX:139866481:139866533:[+] chr19:3980009:3980064:[-] nonBSJ supported CDS

circRNA 5':UUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCU---UCCAAC--CAAGCCAUGU 3'


            ||| || ||||:||:||:|| ||||||| :||| |||| |||


target  3': AGGGUG-UUCCGUGUAGGAGCUACCCGAGGUGCAUCGCCGGGUAGUAGUUCUA-ACAA 5'

 -38.50 2 RIC-seq
chrX:139866620:139866665:[+] chr19:3984144:3984174:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGU-CUUCCA 3'


            ||| | ||:| || :|||||||| |||||


target  3':ACCACUACGUUG----------------CGAGGACGAGCAGGAAGGC 5'

 -29.60 7 RIC-seq
chrX:139866648:139866665:[+] chr19:3979338:3979359:[-] nonBSJ supported CDS

circRNA 5': GCAUCUGC----UCGUCUUCCA 3'


            ||| || || ||:||||


target  3':ACGUC--CGCACCAGGAGGAGGUC 5'

 -15.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:3980005:3980042:[-] target - chr19:3980019-3980020 C>T LINC-JP ICGC
chr19:3980005:3980059:[-] target - chr19:3980019-3980020 C>T LINC-JP ICGC
chr19:3980005:3980064:[-] target - chr19:3980019-3980020 C>T LINC-JP ICGC
chr19:3980007:3980059:[-] target - chr19:3980019-3980020 C>T LINC-JP ICGC
chr19:3980009:3980064:[-] target - chr19:3980019-3980020 C>T LINC-JP ICGC