Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865839:139865872:[+] chr2:219118614:219118637:[+] nonBSJ supported CDS

circRNA 5':CAGUGUCUUCCAGAAAAAUCUACGUCUUCCACCA 3'


            ||:| |||| ||||||||| ||


target  3':AUCGCCCUA---CUUU-----UGCAGAAGG-GG 5'

 -19.40 2 RIC-seq
chrX:139865845:139865872:[+] chr2:219118614:219118647:[+] nonBSJ supported CDS

circRNA 5':CUUCC-AGAAAAAUCU-------ACGUCUUCCACCA 3'


            |:|| ||| ||||||||| ||


target  3':AAGGGUUCUAAUCGCCCUACUUUUGCAGAAGG-GG 5'

 -20.60 1 RIC-seq
chrX:139865880:139865929:[+] chr2:219118614:219118656:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            ||:|| :| :||| ||| | ||||||| ||


target  3':GAGGAGAAUAA--GGGUUCUAAUCGCCCUACUUU--UGCAGAAGG--GG 5'

 -20.80 1 RIC-seq
chrX:139865881:139865922:[+] chr2:219118619:219118657:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCCACAUCUUC--CGGAAAAAAUCCAGGUCUU 3'


            |:||| ||| || ||| | ||||


target  3': GGAGGAGAAUAAGG-GUUCUAAUCGCCCUACUUU--UGCAGA 5'

 -12.80 1 RIC-seq
chrX:139865881:139865925:[+] chr2:219118615:219118657:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCCACAUCUUC--CGGAAAAAAUCCAGGUCUUCCA 3'


            |:||| ||| || ||| | |||||||


target  3': GGAGGAGAAUAAGG-GUUCUAAUCGCCCUACUUU--UGCAGAAGGG 5'

 -21.20 1 RIC-seq
chrX:139865881:139865925:[+] chr2:219118616:219118657:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCCACAUCUUC--CGGAAAAAAUCCAGGUCUUCCA 3'


            |:||| ||| || ||| | |||||||


target  3': GGAGGAGAAUAAGG-GUUCUAAUCGCCCUACUUU--UGCAGAAGG 5'

 -21.50 2 RIC-seq
chrX:139865881:139865929:[+] chr2:219118614:219118657:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCCACAUCUUC--CGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            |:||| ||| || ||| | ||||||| ||


target  3': GGAGGAGAAUAAGG-GUUCUAAUCGCCCUACUUU--UGCAGAAGG--GG 5'

 -22.00 35 RIC-seq
chrX:139865899:139865928:[+] chr2:219118633:219118657:[+] nonBSJ supported CDS

circRNA 5':UCUUCCGGAAAAAAUCCAGGUCUUCCAGCC 3'


            |:||| :|||:| |||


target  3': GGAGGAGAAUAA-GGGUUCUAA---UCGC 5'

 -13.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865880:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865881:139865922:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865881:139865925:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865881:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865899:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC