Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865496:139865499:[+] chr3:57305840:57305843:[+] nonBSJ supported 3UTR

circRNA 5':UCCA 3'


            ||


target  3':UGGA 5'

 -1.40 2 RIC-seq
chrX:139865506:139865509:[+] chr3:57305840:57305843:[+] nonBSJ supported 3UTR

circRNA 5':UCCA 3'


            ||


target  3':UGGA 5'

 -1.40 35 RIC-seq
chrX:139866406:139866427:[+] chr3:57281458:57281473:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCUACUUGUGUCU 3'


            |||||||| |||| ||


target  3':AAGAAGGUC-----AACA-AGU 5'

 -12.90 3 RIC-seq
chrX:139866437:139866445:[+] chr3:57276888:57276897:[+] nonBSJ supported CDS

circRNA 5':GGUA-CGUCU 3'


            |:| |:||


target  3':GCGUCGUAGU 5'

 -5.80 1 RIC-seq
chrX:139866491:139866499:[+] chr3:57276888:57276897:[+] nonBSJ supported CDS

circRNA 5':GGUA-CGUCU 3'


            |:| |:||


target  3':GCGUCGUAGU 5'

 -5.80 14 RIC-seq