Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865749:139865773:[+] chr16:71186624:71186649:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAG 3'


            |||||||| |||:|||


target  3':UGAAGGUCAACGUACCUGAGAGGGUG 5'

 -21.10 1 RIC-seq
chrX:139865749:139865775:[+] chr16:71186624:71186651:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAGAA 3'


            |||||||| |||:||| |


target  3':UGAAGGUCAACGUACCUGAGAGGGUGUA 5'

 -21.80 1 RIC-seq
chrX:139865749:139865779:[+] chr16:71186624:71186656:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAGA--AAGAA 3'


            |||||||| |||:||| | ||||


target  3':UGAAGGUCAACGUACCUGAGAGGGUGUAAUUCU 5'

 -23.40 8 RIC-seq
chrX:139865788:139865814:[+] chr16:71186624:71186651:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAGAA 3'


            |||||||| |||:||| |


target  3':UGAAGGUCAACGUACCUGAGAGGGUGUA 5'

 -21.80 2 RIC-seq
chrX:139865788:139865818:[+] chr16:71186624:71186656:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAGA--AAGAA 3'


            |||||||| |||:||| | ||||


target  3':UGAAGGUCAACGUACCUGAGAGGGUGUAAUUCU 5'

 -23.40 9 RIC-seq
chrX:139865788:139865827:[+] chr16:71186624:71186668:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAGA--AAGAAAUCCA--GGUC 3'


            |||||||| |||:||| | |||| |||| :|:


target  3':UGAAGGUCAACGUACCUGAGAGGGUGUAAUUCUCAAGGUUAUCGA 5'

 -29.30 1 RIC-seq
chrX:139865788:139865829:[+] chr16:71186624:71186675:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUCAAUCAGUGUCUUCCAGA--AAGAAAUCCA------GG-UCUU 3'


            |||||||| |||:||| | |||| |||| || |||


target  3':UGAAGGUCAACGUACCUGAGAGGGUGUAAUUCUCAAGGUUAUCGACCAAGAU 5'

 -29.60 1 RIC-seq