Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865472:139865516:[+] chr16:15133859:15133904:[-] nonBSJ supported CDS

circRNA 5':AUG-UCUUCCGGACAAUCCAUGUCUUCCAA-GAAGCUCC--AAGUCUUC 3'


            || ||:||||||| :|| :|||| || || |||| ||:|||:


target  3':GACGAGGAGGCCUG--GGGC-UAGAACUUUCCUACGAGACAUUUAGAGA 5'

 -34.50 7 RIC-seq
chrX:139865472:139865521:[+] chr16:15133859:15133910:[-] nonBSJ supported CDS

circRNA 5':AUG-UCUUCCGGACAAUCCAUGUCUUCCAA-GAAGCUCC--AAGUCUUC-CAGUA 3'


            || ||:||||||| :|| :|||| || || |||| ||:|||: ||||


target  3':GACGAGGAGGCCUG--GGGC-UAGAACUUUCCUACGAGACAUUUAGAGACGUCAG 5'

 -38.30 1 RIC-seq
chrX:139865472:139865538:[+] chr16:15133859:15133925:[-] nonBSJ supported CDS

circRNA 5':AUG-UCUUCCGGACAAUCCAUGUCUUCCAA-GAAGCUCC--AAGUCUUC-CAGUAAAUCAAGUCUUCCAGCA 3'


            || ||:||||||| :|| :|||| || || |||| ||:|||: |||| || ||||


target  3':GACGAGGAGGCCUG--GGGC-UAGAACUUUCCUACGAGACAUUUAGAGACGUCAGAAUUA-CAACU-GUCGA 5'

 -42.30 5 RIC-seq
chrX:139865474:139865538:[+] chr16:15133862:15133925:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCGGACAAUCCAUGUCUUCCAA-GAAGCUCC--AAGUCUUC-CAGUAAAUCAAGUCUUCCAGCA 3'


            ||:||||||| :|| :|||| || || |||| ||:|||: |||| || ||||


target  3':GAGGAGGCCUG--GGGC-UAGAACUUUCCUACGAGACAUUUAGAGACGUCAGAAUUA-CAACU-GUCGA 5'

 -41.80 1 RIC-seq