5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866153:139866177:[+] | chr12:57963419:57963444:[+] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCAGAAAAUCC-UUGUCUUC 3' | |:||||| |:||||:| target 3':UC-GGAGGUCGAAGCGUUAGCAGAGGA 5' |
-18.30 | 6 | RIC-seq |
| chrX:139866169:139866175:[+] | chr12:57963059:57963065:[+] | nonBSJ supported | CDS |
circRNA 5':CUUGUCU 3' ||||| target 3':CGACAGU 5' |
-4.60 | 1 | RIC-seq |
| chrX:139866279:139866303:[+] | chr12:57963419:57963444:[+] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCAGAAAAUCC-UUGUCUUC 3' | |:||||| |:||||:| target 3':UC-GGAGGUCGAAGCGUUAGCAGAGGA 5' |
-18.30 | 13 | RIC-seq |
| chrX:139866280:139866303:[+] | chr12:57963419:57963444:[+] | nonBSJ supported | CDS |
circRNA 5': GUCUUCCAGAAAAUCC-UUGUCUUC 3' | |:||||| |:||||:| target 3':UC-GGAGGUCGAAGCGUUAGCAGAGGA 5' |
-18.30 | 1 | RIC-seq |
| chrX:139866313:139866340:[+] | chr12:57961352:57961373:[+] | nonBSJ supported | CDS |
circRNA 5':CAUAGCUUCCGAAAAAUCCAGGUCUUCC 3' |:||||||| | :| |||| target 3':AUGUCGAAGGGUGAC-----UC-GAAGA 5' |
-16.10 | 11 | RIC-seq |
| chrX:139866538:139866579:[+] | chr12:57963397:57963446:[+] | nonBSJ supported | CDS |
circRNA 5': CAGAAAAUCCA----------CGUCUUCCAGAAAAUAUAUGUCUUCCAACUA 3' ||| |||| |||||:| ||||||| || target 3':AGUCGG--AGGUCGAAGCGUUAGCAGAGGAAGACCCGGAAACAGAAGAG-GAA 5' |
-22.60 | 12 | RIC-seq |
| chrX:139866545:139866574:[+] | chr12:57963419:57963459:[+] | nonBSJ supported | CDS |
circRNA 5':UCCACGU-----------CUUCCAGAAAAUAUA-UGUCUUCC 3' |||| |:||||| :||||:| target 3': GGUGGCCGAGUCGAGUCGGAGGUCGAAGCGUUAGCAGAGGA 5' |
-19.60 | 2 | RIC-seq |
| chrX:139866545:139866574:[+] | chr12:57963419:57963460:[+] | nonBSJ supported | CDS |
circRNA 5':UCCACGU-----------CUUCCAGAAAAUAUA-UGUCUUCC 3' |||| |:||||| :||||:| target 3':CGGUGGCCGAGUCGAGUCGGAGGUCGAAGCGUUAGCAGAGGA 5' |
-20.00 | 15 | RIC-seq |
| chrX:139866589:139866622:[+] | chr12:57962755:57962781:[+] | nonBSJ supported | CDS |
circRNA 5':UUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGG 3' |||| ||:| ||:||| |||||| target 3':CAGGUC------GUGCCGAGGGAGAC-GAGGUCA 5' |
-23.60 | 16 | RIC-seq |
| chrX:139866589:139866622:[+] | chr12:57962756:57962781:[+] | nonBSJ supported | CDS |
circRNA 5':UUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGG 3' |||| ||:| ||:||| |||||| target 3':CAGGUC------GUGCCGAGGGAGAC-GAGGUC 5' |
-23.30 | 1 | RIC-seq |
| chrX:139866621:139866651:[+] | chr12:57974835:57974867:[+] | nonBSJ supported | CDS |
circRNA 5':GGUCUUCCA--GCA-UCUCCAGGGCUUCCAGCAU 3' |||:| || || :|||| |||:||| || target 3': CAGGAAGUACCGCGGGAGGAACCGGAGGAAGUC 5' |
-28.50 | 2 | RIC-seq |
| chrX:139866679:139866709:[+] | chr12:57962752:57962781:[+] | nonBSJ supported | CDS |
circRNA 5':UUCCAGCA----UCUCUGUGUCUUCCAGCAUCUUC 3' ||||||| ||:|| ||: ||||| |||| target 3':CAGGUCGUGCCGAGGGAGACG--AGGUC--AGAA 5' |
-28.10 | 13 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr12:57962752:57962781:[+] | target | 989069 | chr12:57962759-57962760 | G>A | Hereditary_spastic_paraplegia_10 | ClinVar |
| chr12:57962752:57962781:[+] | target | 2500188 | chr12:57962768-57962769 | G>T | Hereditary_spastic_paraplegia_10 | ClinVar |
| chr12:57962752:57962781:[+] | target | 2735901 | chr12:57962776-57962777 | C>G | Spastic_paraplegia | ClinVar |
| chr12:57962755:57962781:[+] | target | 989069 | chr12:57962759-57962760 | G>A | Hereditary_spastic_paraplegia_10 | ClinVar |
| chr12:57962755:57962781:[+] | target | 2500188 | chr12:57962768-57962769 | G>T | Hereditary_spastic_paraplegia_10 | ClinVar |
| chr12:57962755:57962781:[+] | target | 2735901 | chr12:57962776-57962777 | C>G | Spastic_paraplegia | ClinVar |
| chr12:57962756:57962781:[+] | target | 989069 | chr12:57962759-57962760 | G>A | Hereditary_spastic_paraplegia_10 | ClinVar |
| chr12:57962756:57962781:[+] | target | 2500188 | chr12:57962768-57962769 | G>T | Hereditary_spastic_paraplegia_10 | ClinVar |
| chr12:57962756:57962781:[+] | target | 2735901 | chr12:57962776-57962777 | C>G | Spastic_paraplegia | ClinVar |
| chr12:57963397:57963446:[+] | target | - | chr12:57963431-57963432 | C>T | RECA-EU | ICGC |
| chr12:57963419:57963444:[+] | target | - | chr12:57963431-57963432 | C>T | RECA-EU | ICGC |
| chr12:57963419:57963459:[+] | target | - | chr12:57963431-57963432 | C>T | RECA-EU | ICGC |
| chr12:57963419:57963460:[+] | target | - | chr12:57963431-57963432 | C>T | RECA-EU | ICGC |
| chrX:139866313:139866340:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |
| chrX:139866589:139866622:[+] | circRNA | - | chrX:139866592-139866593 | C>A | LICA-CN | ICGC |