Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865480:139865526:[+] chr5:98236554:98236614:[-] nonBSJ supported CDS

circRNA 5':CGGA--CAA--UCCAUGUCUUCCA-AGAAG------------CUCCA-AGUCUUCCAGUAAAUCA 3'


            || ||| ||| |||||| || ||||| || ||||||||| ||


target  3':ACCAAAGUUUAAGG---AGAAGGAGUCCAACUCCUUGUAGGAGAGGUGUCUGAAGGUCAUCCAG 5'

 -33.40 2 RIC-seq
chrX:139866519:139866541:[+] chr5:98209340:98209367:[-] nonBSJ supported CDS

circRNA 5':CCAACCAA-----GCCAUGUCUUCCAGA 3'


            |||||| :||| |||:||||


target  3':CGUUGGUAAUACAUGGUUAAGAGGGUCA 5'

 -23.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:98209340:98209367:[-] target - chr5:98209352-98209353 T>C LICA-CN ICGC