Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865480:139865542:[+] chr6:4892257:4892326:[+] nonBSJ supported 5UTR

circRNA 5':CGGACAAUCCAUG-UCUUCCA---------AGA---AGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUC 3'


            || |||||| |||||| ||| |||| |||||| | || | || |||||||:


target  3':UCC----AGGUACAAGAAGGCCGACCUCUCUCUACCUCGACACA-AGAAGGACUUGAAGACC-GACCGUCGUUUGU 5'

 -36.80 13 RIC-seq
chrX:139866403:139866458:[+] chr6:4892250:4892321:[+] nonBSJ supported 5UTR

circRNA 5':AAUG-UCUUCCAGCCUAC-----------UUGUG-UCUUCC--AACAAA-GGUACGUCUUCCAACAAA-GGUA 3'


            ||| |||||| || :|||| |||||| ||| ||: | | | |||| ||:


target  3':GUACAAGAAGGCCGACCUCUCUCUACCUCGACACAAGAAGGACUUGAAGACCGACC-GUCGUUUGUCGACCGA 5'

 -29.00 12 RIC-seq
chrX:139866404:139866440:[+] chr6:4892254:4892290:[+] nonBSJ supported 5UTR

circRNA 5':AUG-UCUUCCAGCCUACUUGUGUCUUCCAACAAA-GGUA 3'


            || |||||| |||| || || || |||| :|:


target  3':CACAAGAAGGACU--UGAAGACCGACCGUCGUUUGUCGA 5'

 -18.40 1 RIC-seq
chrX:139866781:139866815:[+] chr6:4892248:4892282:[+] nonBSJ supported 5UTR

circRNA 5': CUGAUCUUCUGACAUUCAGGUCUUCCAGUGU-CUGC 3'


            |||| |||||| | ||| |||: |||


target  3':GGACUUGAAGACCGACCGUCGUUU--GUCGACCGACA 5'

 -21.40 10 RIC-seq
chrX:139866782:139866816:[+] chr6:4892254:4892290:[+] nonBSJ supported 5UTR

circRNA 5': UGAUCUU-CUGACAUUCAGGUCUUCCAGUGUCU-GCA 3'


            || |||| |||| ||| || || |||:: ||


target  3':CACAAGAAGGACUUGAAGACC-GACCGUCGUUUGUCGA 5'

 -20.10 4 RIC-seq
chrX:139866176:139866215:[+] chr6:4892470:4892498:[+] nonBSJ supported CDS

circRNA 5':UCCCU-UAAAUCUAUAGCUUCCAAAAAAUCCGGGUCUUCCA 3'


            ||| ||| ||||:| |||| | ||||


target  3':CGGGUUAUU------UCGAGGCU------GGCCGAAAAGGC 5'

 -19.70 1 RIC-seq
chrX:139866186:139866215:[+] chr6:4892470:4892493:[+] nonBSJ supported CDS

circRNA 5':CUAUAGCUUCCAAAAAAUCCGGGUCUUCCA 3'


            || ||||:| |||| | ||||


target  3':UAUUUCGAGGCU------GGCCGAAAAGGC 5'

 -18.10 1 RIC-seq
chrX:139866189:139866215:[+] chr6:4892470:4892490:[+] nonBSJ supported CDS

circRNA 5':UAGCUUCCAAAAAAUCCGGGUCUUCCA 3'


            ||||:| |||| | ||||


target  3':UUCGAGGCU------GGCCGAAAAGGC 5'

 -18.00 2 RIC-seq
chrX:139866205:139866236:[+] chr6:4892468:4892501:[+] nonBSJ supported CDS

circRNA 5':CGGGUCUUCC-AGGAAAU--CCGUGUC-UUCCAGCA 3'


            |||:|: |:| ||| |: |||| ||


target  3':CCCCGGGUUAUUUCGAGGCUGGC-CGAAAAGG-CGA 5'

 -20.70 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866781:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866782:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC