Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866471:139866480:[+] chr11:83169931:83169940:[-] nonBSJ supported 3UTR

circRNA 5':AAGGUAUGUC 3'


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target  3':CUCCAUUCAC 5'

 -6.50 2 RIC-seq
chrX:139866489:139866506:[+] chr11:83169931:83169947:[-] nonBSJ supported 3UTR

circRNA 5':AAGGUACGUCUUCCAGAA 3'


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target  3':CUCCAUUCACUCCUUCU 5'

 -6.90 11 RIC-seq
chrX:139866632:139866647:[+] chr11:83170356:83170372:[-] nonBSJ supported 3UTR

circRNA 5':AUCUCC--AGGGCUUCCA 3'


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target  3': AGAGGUUUCCCUAAGGA 5'

 -18.20 1 RIC-seq
chrX:139866632:139866664:[+] chr11:83170356:83170387:[-] nonBSJ supported 3UTR

circRNA 5':AUCUCC--AGGGCUUCCAGCAUCUGCUCGUCUUCC 3'


            ||||| |||| |||| ||| :||||


target  3': AGAGGUUUCCCUAAGGAA--AGAAAAAAGGAAGA 5'

 -23.10 32 RIC-seq
chrX:139866632:139866665:[+] chr11:83170356:83170383:[-] nonBSJ supported 3UTR

circRNA 5':AUCUCC--AGGGCUUCCAGCAUCUGCUCGUCUUCCA 3'


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target  3': AGAGGUUUCCCUAAGGAA--AGAAAA----AAGG 5'

 -20.30 1 RIC-seq