Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866471:139866486:[+]	chr11:48092915:48092938:[+]	nonBSJ supported	Intron	circRNA 5': AAGGUA-UGUC------UUCCAA 3' \|\|\|:\|\| :\|:\| :\|\|\|\| target 3':GUUCUAUCGCGGUGACGUGAGGUC 5'	-10.30	1	RIC-seq
chrX:139866653:139866701:[+]	chr11:48067321:48067367:[+]	nonBSJ supported	Intron	circRNA 5':UGCUC-GUCUUCCAACAUCUCCACGUCUUC-CAGCAU--CUCU-GUGUCUUCCA 3' \|\|: \|:\|:\|\| \|:\|\|\|\| \|\|\|\|\| \| \|\|\| \| \|\| target 3':CCGGUCCGGGAGU-----GGGGUGACCGUCCGUCGUCCCGUCCCCAC-GUCGG 5'	-25.20	1	RIC-seq
chrX:139866767:139866803:[+]	chr11:48048018:48048057:[+]	nonBSJ supported	Intron	circRNA 5':ACGUCUCCAGUGUGCU---GAUCUUCUGACAUUCAGGUCU 3' \|\|\|\|\|\| :\| \|:\|\|:\|\|\|\|\|\|\|:\|\|\| target 3':GGCAGAGUUUUUUUUUUUUUUUCAGGAUUGUAAGUUCAGU 5'	-30.10	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866767:139866803:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC