Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865379:139865397:[+] chr9:34635577:34635594:[-] nonBSJ supported 3UTR

circRNA 5':CCGGGUCUUCCAGCGACUU 3'


            ||||:|| || || ||


target  3':CGCCCGGACGGGCGAGGA 5'

 -20.10 1 RIC-seq
chrX:139865379:139865427:[+] chr9:34635577:34635614:[-] nonBSJ supported 3UTR

circRNA 5':CCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCA 3'


            ||||:|| || || || |||| |||: |||||||||


target  3':CGCCCGGACGGGCGAGGA----CAGA-------UAGGCGUCCAGAAGGA 5'

 -41.00 22 RIC-seq
chrX:139865379:139865438:[+] chr9:34635577:34635624:[-] nonBSJ supported 3UTR

circRNA 5':CCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGA 3'


            ||||:|| || || || |||| |||: ||||||||| ||||


target  3':CGCCCGGACGGGCGAGGA----CAGA-------UAGGCGUCCAGAAGGAAGUCC-GGACC 5'

 -45.10 1 RIC-seq
chrX:139865379:139865442:[+] chr9:34635577:34635627:[-] nonBSJ supported 3UTR

circRNA 5':CCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGCUU 3'


            ||||:|| || || || |||| |||: ||||||||| |||| |||


target  3':CGCCCGGACGGGCGAGGA----CAGA-------UAGGCGUCCAGAAGGAAGUCC-GGAC-CGAC 5'

 -48.70 25 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:34635577:34635594:[-] target 431074 chr9:34635588-34635589 CGCTCCTGTCTATCCGCAGGTCTTCCTTCAGGCCTGGCTGGTCAAGGGTCCTGGCCAAAGAGGTAGGTGGTGAGCTCAAGCCGGAGGCCCCGAGCATAGGAGCGAAGAGTATAGAAGAGGGTGAGGAAGTCCTGGGTGCTGAAGACAGTGTCGGCCAGCGCGAAGGCCAGGGTGGATGGGATGACGCCCCGGCCGTACTCCACCATCCATGTGTTTGGCCCCCACTCCACAGCTGTTGCCTCACCAGGCCCGTGTACTACCGTCTCCCCTGGGGGACAGGGAGCACCCAAGTG>C Amyotrophic_lateral_sclerosis_type_16 ClinVar
chr9:34635577:34635614:[-] target 431074 chr9:34635588-34635589 CGCTCCTGTCTATCCGCAGGTCTTCCTTCAGGCCTGGCTGGTCAAGGGTCCTGGCCAAAGAGGTAGGTGGTGAGCTCAAGCCGGAGGCCCCGAGCATAGGAGCGAAGAGTATAGAAGAGGGTGAGGAAGTCCTGGGTGCTGAAGACAGTGTCGGCCAGCGCGAAGGCCAGGGTGGATGGGATGACGCCCCGGCCGTACTCCACCATCCATGTGTTTGGCCCCCACTCCACAGCTGTTGCCTCACCAGGCCCGTGTACTACCGTCTCCCCTGGGGGACAGGGAGCACCCAAGTG>C Amyotrophic_lateral_sclerosis_type_16 ClinVar
chr9:34635577:34635624:[-] target 431074 chr9:34635588-34635589 CGCTCCTGTCTATCCGCAGGTCTTCCTTCAGGCCTGGCTGGTCAAGGGTCCTGGCCAAAGAGGTAGGTGGTGAGCTCAAGCCGGAGGCCCCGAGCATAGGAGCGAAGAGTATAGAAGAGGGTGAGGAAGTCCTGGGTGCTGAAGACAGTGTCGGCCAGCGCGAAGGCCAGGGTGGATGGGATGACGCCCCGGCCGTACTCCACCATCCATGTGTTTGGCCCCCACTCCACAGCTGTTGCCTCACCAGGCCCGTGTACTACCGTCTCCCCTGGGGGACAGGGAGCACCCAAGTG>C Amyotrophic_lateral_sclerosis_type_16 ClinVar
chr9:34635577:34635627:[-] target 431074 chr9:34635588-34635589 CGCTCCTGTCTATCCGCAGGTCTTCCTTCAGGCCTGGCTGGTCAAGGGTCCTGGCCAAAGAGGTAGGTGGTGAGCTCAAGCCGGAGGCCCCGAGCATAGGAGCGAAGAGTATAGAAGAGGGTGAGGAAGTCCTGGGTGCTGAAGACAGTGTCGGCCAGCGCGAAGGCCAGGGTGGATGGGATGACGCCCCGGCCGTACTCCACCATCCATGTGTTTGGCCCCCACTCCACAGCTGTTGCCTCACCAGGCCCGTGTACTACCGTCTCCCCTGGGGGACAGGGAGCACCCAAGTG>C Amyotrophic_lateral_sclerosis_type_16 ClinVar
chr9:34635577:34635614:[-] target - chr9:34635602-34635603 C>T COCA-CN ICGC
chr9:34635577:34635624:[-] target - chr9:34635602-34635603 C>T COCA-CN ICGC
chr9:34635577:34635627:[-] target - chr9:34635602-34635603 C>T COCA-CN ICGC