Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866488:139866530:[+] chr2:160605198:160605250:[+] nonBSJ supported CDS

circRNA 5':AAAGGUACGUCUUCCA-GAA-AAUCCACG-------------UCUUCCAACCA--AGCCA 3'


            |||| ||| ||| ||||| |||||| ||| ||||


target  3':AUUCCUU------GGUCCUUCUUAGGGACUAUAAGGACAUAAAGAAGG-UGGAACUCGGC 5'

 -27.10 1 RIC-seq
chrX:139866491:139866530:[+] chr2:160605198:160605255:[+] nonBSJ supported CDS

circRNA 5': GGUACGUCUU-CCA-GAA-AAUCCACG-------------UCUUCCAACCA--AGCCA 3'


            || ||| ||| ||||| |||||| ||| ||||


target  3':GCCUUAUUCCUUGGUCCUUCUUAGGGACUAUAAGGACAUAAAGAAGG-UGGAACUCGGC 5'

 -27.10 1 RIC-seq