Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865669:139865740:[+] chr6:151671108:151671161:[+] nonBSJ supported CDS

circRNA 5': CCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUC-UUCCAGAAAA 3'


            || || |||| || || ||:||| ||| |||| ||| ||| |||||||||


target  3':GGG-ACU-AAGG-------AG-CAGAGGAGG------AGGAGAA-AAGGGAA---AGACAAAGAAAGGUCUUUC 5'

 -33.90 1 RIC-seq
chrX:139866316:139866374:[+] chr6:151673674:151673712:[+] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA--GCAAAUCCACGUCUU 3'


            |||||| |||||:: || ||||| || || |:|||


target  3':CCGAAGG--------------AAGGUUUGACG---ACUGAAGGAAACG----GG-GUAGAU 5'

 -28.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866374:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC