Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866624:139866656:[+] chr11:14501193:14501224:[-] nonBSJ supported CDS

circRNA 5': CUUC-C-AGCAU-CUCCAGGGCUUCCAGCAUCUGCU 3'


            |||| | |:|| |||||:|:| | ||||| ||


target  3':CGAAGUGCUUGUUUGAGGUUCUGUA-GUCGU---CG 5'

 -27.50 1 RIC-seq
chrX:139866624:139866682:[+] chr11:14501193:14501256:[-] nonBSJ supported CDS

circRNA 5': CUUC-C-AGCAU-CUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC----UUCC 3'


            |||| | |:|| |||||:|:| | ||||| ||||| | |||| ||| ||||


target  3':CGAAGUGCUUGUUUGAGGUUCUGUA-GUCGUCGACGA-C-GAAGCAACAACA-GUGACUCUUUAAGGU 5'

 -41.00 2 RIC-seq
chrX:139866624:139866683:[+] chr11:14501193:14501257:[-] nonBSJ supported CDS

circRNA 5': CUUC-C-AGCAU-CUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC----UUCCA 3'


            |||| | |:|| |||||:|:| | ||||| ||||| | |||| ||| |||||


target  3':CGAAGUGCUUGUUUGAGGUUCUGUA-GUCGUCGACGA-C-GAAGCAACAACA-GUGACUCUUUAAGGUA 5'

 -42.90 10 RIC-seq
chrX:139866624:139866683:[+] chr11:14501195:14501257:[-] nonBSJ supported CDS

circRNA 5':CUUC-C-AGCAU-CUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC----UUCCA 3'


            ||| | |:|| |||||:|:| | ||||| ||||| | |||| ||| |||||


target  3': AAGUGCUUGUUUGAGGUUCUGUA-GUCGUCGACGA-C-GAAGCAACAACA-GUGACUCUUUAAGGUA 5'

 -40.00 1 RIC-seq