Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865432:139865449:[+] chr13:46563160:46563176:[-] nonBSJ supported CDS

circRNA 5':AUCCUGAGCUUCCAGAAA 3'


            |||||| |||


target  3': AGGACUAACACUCCUUC 5'

 -9.20 10 RIC-seq
chrX:139865433:139865449:[+] chr13:46563161:46563176:[-] nonBSJ supported CDS

circRNA 5':UCCUGAGCUUCCAGAAA 3'


            ||||| |||


target  3': GGACUAACACUCCUUC 5'

 -7.10 1 RIC-seq
chrX:139865457:139865505:[+] chr13:46563117:46563177:[-] nonBSJ supported CDS

circRNA 5': UCUUCCA-GACAAUCC--------AUGUCUUCC---GGACAAUCCAUGUCUUCCAAGAAGC 3'


            |||| ||| ||||||| :|| |||| || ||||


target  3':AAGAAAAAGCUGCUCCUCUUCCUCUUACAGAAACUUAUCUACUAGG-ACUAACACUCCUUCU 5'

 -15.60 13 RIC-seq
chrX:139865824:139865847:[+] chr13:46585672:46585691:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGUCAGUCAGUGUCUU 3'


            ||| |||| ||||| :|||


target  3':AUAG-AGGUAA--CAGUCUUAGA 5'

 -17.10 27 RIC-seq
chrX:139865824:139865848:[+] chr13:46585672:46585693:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGUCAGUCAGUGUCUUC 3'


            ||| |||| ||||| :||||


target  3':AUAG-AGGUAA--CAGUCUUAGAAA 5'

 -18.60 3 RIC-seq
chrX:139865836:139865854:[+] chr13:46563179:46563194:[-] nonBSJ supported CDS

circRNA 5': AGUCAGUGUCUUCCAGAAA 3'


            ||| :||||| ||||


target  3':CUCAC-UACAGA---UCUUC 5'

 -8.00 27 RIC-seq
chrX:139865840:139865854:[+] chr13:46563183:46563194:[-] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAA 3'


            |||||| ||||


target  3':CUACAGA---UCUUC 5'

 -8.00 1 RIC-seq
chrX:139866008:139866031:[+] chr13:46616315:46616358:[-] nonBSJ supported CDS

circRNA 5': AGUCUUC--------------------CAGAAAAUCCACGUCUU 3'


            | ||:|| ||| ||||||||||


target  3':CUGAGGAGACAUAAAGCAAAGACCCCGAGUCAC--AGGUGCAGAAC 5'

 -18.10 1 RIC-seq
chrX:139866008:139866032:[+] chr13:46616315:46616358:[-] nonBSJ supported CDS

circRNA 5': AGUCUUC--------------------CAGAAAAUCCACGUCUUC 3'


            | ||:|| ||| ||||||||||


target  3':CUGAGGAGACAUAAAGCAAAGACCCCGAGUCAC--AGGUGCAGAAC 5'

 -18.40 33 RIC-seq
chrX:139866009:139866015:[+] chr13:46616366:46616372:[-] nonBSJ supported CDS

circRNA 5':GUCUUCC 3'


            |||||


target  3':AAGAAGU 5'

 -4.80 2 RIC-seq
chrX:139866009:139866032:[+] chr13:46585568:46585592:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAUCCACGUCUUC 3'


            ||||| |||| || |||


target  3':AAGAAGAGAGAAGAGGUACAAAAGA 5'

 -11.80 25 RIC-seq
chrX:139866009:139866032:[+] chr13:46585569:46585592:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAUCCACGUCUUC 3'


            ||||| |||| || |||


target  3': AGAAGAGAGAAGAGGUACAAAAGA 5'

 -11.20 1 RIC-seq
chrX:139866011:139866032:[+] chr13:46585579:46585605:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAA------UCCACGUCUUC 3'


            ||||| |||| | ||||


target  3':AGAGGUACAAAAGAACAAGGU-C-GAAGU 5'

 -9.50 5 RIC-seq
chrX:139866014:139866032:[+] chr13:46616342:46616358:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCACGUCUUC 3'


            ||| ||||||||||


target  3':AGUCAC--AGGUGCAGAAC 5'

 -17.80 1 RIC-seq
chrX:139866021:139866032:[+] chr13:46616347:46616358:[-] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUC 3'


            ||||||||||


target  3':CAGGUGCAGAAC 5'

 -16.10 1 RIC-seq
chrX:139866027:139866032:[+] chr13:46616366:46616372:[-] nonBSJ supported CDS

circRNA 5':GUCUUC 3'


            |||||


target  3':AAGAAGU 5'

 -4.00 3 RIC-seq
chrX:139866262:139866308:[+] chr13:46594632:46594680:[-] nonBSJ supported CDS

circRNA 5':GUC-UUCC--AGACUAUCC-AUGUCUUCCAGAAAAUCCU-UGUCUUCCCUCA 3'


            || |||| || ||||||||| :||| |||| ||||||


target  3':AAGAAAGGAAUCACUAAAAAUACAGAAGGAAAA--GGGAUACAG-AGGGAGA 5'

 -34.20 3 RIC-seq
chrX:139866264:139866308:[+] chr13:46594635:46594680:[-] nonBSJ supported CDS

circRNA 5':CUUCC--AGACUAUCC-AUGUCUUCCAGAAAAUCCU-UGUCUUCCCUCA 3'


            |||| || ||||||||| :||| |||| ||||||


target  3':AAAGGAAUCACUAAAAAUACAGAAGGAAAA--GGGAUACAG-AGGGAGA 5'

 -33.70 3 RIC-seq
chrX:139866497:139866519:[+] chr13:46585568:46585592:[-] nonBSJ supported CDS

circRNA 5': UCUUCCAGAAAAUCCACGUCUUC 3'


            ||||| |||| || |||


target  3':AAGAAGAGAGAAGAGGUACAAAAGA 5'

 -11.80 1 RIC-seq
chrX:139866514:139866519:[+] chr13:46616366:46616372:[-] nonBSJ supported CDS

circRNA 5':GUCUUC 3'


            |||||


target  3':AAGAAGU 5'

 -4.00 2 RIC-seq
chrX:139866532:139866538:[+] chr13:46616366:46616372:[-] nonBSJ supported CDS

circRNA 5':GUCUUCC 3'


            |||||


target  3':AAGAAGU 5'

 -4.80 1 RIC-seq
chrX:139866533:139866555:[+] chr13:46585568:46585592:[-] nonBSJ supported CDS

circRNA 5': UCUUCCAGAAAAUCCACGUCUUC 3'


            ||||| |||| || |||


target  3':AAGAAGAGAGAAGAGGUACAAAAGA 5'

 -11.80 1 RIC-seq
chrX:139866534:139866555:[+] chr13:46585569:46585592:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGAAAAUCCACGUCUUC 3'


            |||| |||| || |||


target  3':AGAAGAGAGAAGAGGUACAAAAGA 5'

 -10.20 1 RIC-seq
chrX:139866550:139866555:[+] chr13:46616366:46616372:[-] nonBSJ supported CDS

circRNA 5':GUCUUC 3'


            |||||


target  3':AAGAAGU 5'

 -4.00 3 RIC-seq