Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865556:139865607:[+] chr1:27105893:27105948:[+] nonBSJ supported CDS

circRNA 5':AUUACUGGU----CUUCCACCAAAU--CCAGAUCUUCCAGGAAAAUCCAC-GUC---UUCCA 3'


            |:| |||| |::||||||| |||| |||| |||| ||| :|||


target  3':GAGUCACCACAGGGGGGGUGGUUAGGCGGUCACGUC-GUCC-----GGUGACAGUUUGAGGA 5'

 -36.90 1 RIC-seq
chrX:139865556:139865622:[+] chr1:27105882:27105948:[+] nonBSJ supported CDS

circRNA 5':AUUACUGGU----CUUCCACCAAAU--CCAGAUCUUCCAGGAAAAUCCAC-GUC---UUCCAGGAAAUCCAUGUCUU 3'


            |:| |||| |::||||||| |||| |||| |||| ||| :||| | | ||:|:|:


target  3':GAGUCACCACAGGGGGGGUGGUUAGGCGGUCACGUC-GUCC-----GGUGACAGUUUGAGGACGU----GUGCGGGU 5'

 -42.80 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:27105882:27105948:[+] target 984945 chr1:27105920-27105921 G>A Intellectual_disability,_autosomal_dominant_14 ClinVar
chr1:27105893:27105948:[+] target 984945 chr1:27105920-27105921 G>A Intellectual_disability,_autosomal_dominant_14 ClinVar