Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865559:139865579:[+] chr3:48789720:48789737:[-] nonBSJ supported CDS

circRNA 5':ACUGGUCUUCCACCAAAUCCA 3'


            ||||| |:|||||| |||


target  3':GGACCA-AGGGUGGU--AGGA 5'

 -23.50 12 RIC-seq
chrX:139866614:139866637:[+] chr3:48786844:48786867:[-] nonBSJ supported Intron

circRNA 5': AUCUCCAGGUCUUCCAGCAUCUCC 3'


            ||| |||::| ::|||:||||||


target  3':UUAG-GGUUUAUGGGGUUGUAGAGU 5'

 -25.90 1 RIC-seq
chrX:139866614:139866644:[+] chr3:48786844:48786870:[-] nonBSJ supported Intron

circRNA 5': AUCUCCAGGUCUUCCAGCAUCUCCAGGGCUU 3'


            ||| |||::| ::|||:|||||| ::||


target  3':UUAG-GGUUUAUGGGGUUGUAGAG---UUGA 5'

 -26.10 19 RIC-seq