Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865744:139865758:[+] chr10:60154769:60154783:[+] nonBSJ supported CDS

circRNA 5':UAGAUCUUCCAGUCA 3'


            |||||:| |||


target  3':UUCUAGGAAAGCAGG 5'

 -10.90 3 RIC-seq
chrX:139865763:139865791:[+] chr10:60154737:60154756:[+] nonBSJ supported CDS

circRNA 5':GUG-UCUUCCAGAAAGAAAUCCAGGUCUUC 3'


            || ||||| |||:| ||||


target  3':AACAAGAAG-----------GGUUCUGAAGU 5'

 -13.60 10 RIC-seq
chrX:139865775:139865795:[+] chr10:60154767:60154786:[+] nonBSJ supported CDS

circRNA 5':AAGAA-AUCCAGGUCUUCCAGU 3'


            |||| |||| || ||||:


target  3':AUCUUCUAGGAA-AGCAGGUU 5'

 -12.10 1 RIC-seq
chrX:139865775:139865797:[+] chr10:60154766:60154786:[+] nonBSJ supported CDS

circRNA 5':AAGAA-AUCCAGGUCUUCCAGUCA 3'


            |||| |||| || ||||: |


target  3':AUCUUCUAGGAA-AGCAGGUU-G 5'

 -12.40 27 RIC-seq
chrX:139865781:139865792:[+] chr10:60154737:60154748:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCC 3'


            |||:| ||||


target  3':GGGUUCUGAAGU 5'

 -12.30 1 RIC-seq
chrX:139865802:139865830:[+] chr10:60154737:60154756:[+] nonBSJ supported CDS

circRNA 5':GUG-UCUUCCAGAAAGAAAUCCAGGUCUUC 3'


            || ||||| |||:| ||||


target  3':AACAAGAAG-----------GGUUCUGAAGU 5'

 -13.60 5 RIC-seq
chrX:139865802:139865868:[+] chr10:60154708:60154756:[+] nonBSJ supported CDS

circRNA 5':GUG-UCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCC 3'


            || ||||| |||:| |||| ||| :|| || ||||:||


target  3':AACAAGAAG-----------GGUUCUGAAGUAAAGUAA--UACUAUUG--CUCAAA----GCAGGAGA 5'

 -23.50 15 RIC-seq
chrX:139865820:139865868:[+] chr10:60154708:60154748:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCC 3'


            |||:| |||| ||| :|| || ||||:||


target  3':GGGUUCUGAAGUAAAGUAA--UACUAUUG--CUCAAA----GCAGGAGA 5'

 -21.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:60154708:60154748:[+] target - chr10:60154722-60154723 G>A PACA-CA ICGC
chr10:60154708:60154756:[+] target - chr10:60154722-60154723 G>A PACA-CA ICGC