Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866329:139866346:[+] chr9:130591995:130592011:[-] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCAGGAAA 3'


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target  3': GGACCUCUACGUCCUUC 5'

 -11.10 1 RIC-seq
chrX:139866414:139866435:[+] chr9:130591995:130592014:[-] nonBSJ supported CDS

circRNA 5':GCCUACUUGUGUCUUCCAACAA 3'


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target  3': GGACCUCUACGUCCUUCUGU 5'

 -4.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:130591995:130592011:[-] target 983202 chr9:130591998-130591999 G>A Hereditary_hemorrhagic_telangiectasia|Telangiectasia,_hereditary_hemorrhagic,_type_1 ClinVar
chr9:130591995:130592014:[-] target 983202 chr9:130591998-130591999 G>A Hereditary_hemorrhagic_telangiectasia|Telangiectasia,_hereditary_hemorrhagic,_type_1 ClinVar
chr9:130591995:130592014:[-] target 1727955 chr9:130592011-130592012 GAC>G Cardiovascular_phenotype ClinVar
chr9:130591995:130592014:[-] target 665710 chr9:130592012-130592013 A>T Hereditary_hemorrhagic_telangiectasia ClinVar