Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866775:139866801:[+] chr16:87764158:87764188:[-] nonBSJ supported CDS

circRNA 5':AGUGUGCUGAUCUU-----CUGACAUUCAGGU 3'


            ||||:|| || |: || ||||


target  3':GCACAUGAA-AGUACCUUCGGUGGUUUGUCCU 5'

 -16.70 1 RIC-seq
chrX:139866775:139866803:[+] chr16:87764158:87764190:[-] nonBSJ supported CDS

circRNA 5':AGUGUGCUGAUCUU-----CUGACAUUCAGG-UCU 3'


            ||||:|| || |: || |||| ||


target  3':GCACAUGAA-AGUACCUUCGGUGGUUUGUCCUAG 5'

 -18.00 3 RIC-seq
chrX:139866775:139866803:[+] chr16:87764158:87764191:[-] nonBSJ supported CDS

circRNA 5':AGUGUGCUGAUCUU-----CUGACAUUCAGG-UCU 3'


            ||||:|| || |: || |||| ||


target  3':GCACAUGAA-AGUACCUUCGGUGGUUUGUCCUAGU 5'

 -18.00 26 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866775:139866801:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866775:139866803:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC