Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866685:139866725:[+] chr8:90994998:90995049:[-] nonBSJ supported 5UTR

circRNA 5':CAUCU-CUGUGUCUUCCA-----------GCAUCUUCAUGUCUUCCAACAACU 3'


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target  3':CUAGCUGAC-UAGUAAAAGUUAGUCUUACCGUGUCAAAAAGGAAGGUUGUUGC 5'

 -23.20 3 RIC-seq
chrX:139866685:139866725:[+] chr8:90995008:90995049:[-] nonBSJ supported 5UTR

circRNA 5': CAUCUCUGUGUCUUCCA-GCAUCUUCAUGUCUUCCAACAACU 3'


            ||| :|| |||: :|||||||||||


target  3':AGUAAAAGU-UAGUCUUACCGUGUCAAAAAGGAAGGUUGUUGC 5'

 -22.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:90994998:90995049:[-] target 220399 chr8:90995005-90995006 TG>T Microcephaly,_normal_intelligence_and_immunodeficiency|Aplastic_anemia ClinVar
chr8:90994998:90995049:[-] target 924935 chr8:90995006-90995007 G>A Hereditary_cancer-predisposing_syndrome|Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90994998:90995049:[-] target 1070578 chr8:90995007-90995008 A>ATCATTTTCTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90994998:90995049:[-] target 3595945 chr8:90995011-90995012 TT>G Microcephaly,_normal_intelligence_and_immunodeficiency|Acute_lymphoid_leukemia|Aplastic_anemia ClinVar
chr8:90994998:90995049:[-] target 1458916 chr8:90995024-90995025 T>TGGCA Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90994998:90995049:[-] target 219789 chr8:90995026-90995027 GCA>G Aplastic_anemia|Microcephaly,_normal_intelligence_and_immunodeficiency|not_provided|Hereditary_cancer-predisposing_syndrome|Prostate_cancer_susceptibility|Familial_cancer_of_breast|Lymphoma ClinVar
chr8:90994998:90995049:[-] target 1766831 chr8:90995027-90995028 CA>C Hereditary_cancer-predisposing_syndrome ClinVar
chr8:90994998:90995049:[-] target 802422 chr8:90995031-90995032 GT>G Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90994998:90995049:[-] target 141398 chr8:90995031-90995032 GTT>G Microcephaly,_normal_intelligence_and_immunodeficiency|Hereditary_cancer-predisposing_syndrome ClinVar
chr8:90994998:90995049:[-] target 483951 chr8:90995031-90995032 GTTTTTCC>G Microcephaly,_normal_intelligence_and_immunodeficiency|Hereditary_cancer-predisposing_syndrome ClinVar
chr8:90994998:90995049:[-] target 2018273 chr8:90995042-90995043 C>CA Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90994998:90995049:[-] target 480025 chr8:90995045-90995046 C>CA Hereditary_cancer-predisposing_syndrome|Microcephaly,_normal_intelligence_and_immunodeficiency|not_provided ClinVar
chr8:90994998:90995049:[-] target 3595946 chr8:90995047-90995048 AC>A Microcephaly,_normal_intelligence_and_immunodeficiency|Acute_lymphoid_leukemia|Aplastic_anemia ClinVar
chr8:90995008:90995049:[-] target 3595945 chr8:90995011-90995012 TT>G Microcephaly,_normal_intelligence_and_immunodeficiency|Acute_lymphoid_leukemia|Aplastic_anemia ClinVar
chr8:90995008:90995049:[-] target 1458916 chr8:90995024-90995025 T>TGGCA Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90995008:90995049:[-] target 219789 chr8:90995026-90995027 GCA>G Aplastic_anemia|Microcephaly,_normal_intelligence_and_immunodeficiency|not_provided|Hereditary_cancer-predisposing_syndrome|Prostate_cancer_susceptibility|Familial_cancer_of_breast|Lymphoma ClinVar
chr8:90995008:90995049:[-] target 1766831 chr8:90995027-90995028 CA>C Hereditary_cancer-predisposing_syndrome ClinVar
chr8:90995008:90995049:[-] target 802422 chr8:90995031-90995032 GT>G Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90995008:90995049:[-] target 141398 chr8:90995031-90995032 GTT>G Microcephaly,_normal_intelligence_and_immunodeficiency|Hereditary_cancer-predisposing_syndrome ClinVar
chr8:90995008:90995049:[-] target 483951 chr8:90995031-90995032 GTTTTTCC>G Microcephaly,_normal_intelligence_and_immunodeficiency|Hereditary_cancer-predisposing_syndrome ClinVar
chr8:90995008:90995049:[-] target 2018273 chr8:90995042-90995043 C>CA Microcephaly,_normal_intelligence_and_immunodeficiency ClinVar
chr8:90995008:90995049:[-] target 480025 chr8:90995045-90995046 C>CA Hereditary_cancer-predisposing_syndrome|Microcephaly,_normal_intelligence_and_immunodeficiency|not_provided ClinVar
chr8:90995008:90995049:[-] target 3595946 chr8:90995047-90995048 AC>A Microcephaly,_normal_intelligence_and_immunodeficiency|Acute_lymphoid_leukemia|Aplastic_anemia ClinVar
chr8:90994998:90995049:[-] target - chr8:90995019-90995020 C>T LAML-KR ICGC
chr8:90995008:90995049:[-] target - chr8:90995019-90995020 C>T LAML-KR ICGC