Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866579:139866611:[+] chr16:30128253:30128280:[-] nonBSJ supported CDS

circRNA 5':AAGCUA-CGUCUUCCAACAAAUCCA-UGUCUUCCU 3'


            |||:| || ||||| |||| ||| |||


target  3':CUCGGUCGC-GAAGG------AGGUGACACUAGGC 5'

 -23.70 38 RIC-seq
chrX:139866610:139866624:[+] chr16:30128233:30128247:[-] nonBSJ supported CDS

circRNA 5':CUAUAUCUCCAGGUC 3'


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target  3':CAUGACGAGGUCCAU 5'

 -14.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866579:139866611:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC