Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865575:139865625:[+]	chr20:16359655:16359702:[-]	nonBSJ supported	CDS	circRNA 5':AUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUUCCA 3' \|\| \|\|: \|\|\|\|::\| \|\|\| \|\|:\| \|\|:\|\|\| target 3':GAGACCUG--AGGUUUUAG-AGGAAAAGGAAAAAGGAGUGAAAAAGGAGGA 5'	-21.80	8	RIC-seq
chrX:139865581:139865625:[+]	chr20:16359651:16359702:[-]	nonBSJ supported	CDS	circRNA 5':AUCUUCCAGGAAAAUCCAC-GUCUUCCAGGAAA---UCCAUG-----UCUUCCA 3' \|\|\|: \| \|\|\| \|\|\|\| :\|\|\|:\| \|\|\| \|\|:\|\|\| target 3':AAGAGAGACCUG--AGGUUUUAGAGGAAAAGGAAAAAGGAGUGAAAAAGGAGGA 5'	-21.60	8	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr20:16359651:16359702:[-]	target	-	chr20:16359702-16359703	T>C	PACA-CA	ICGC
chr20:16359655:16359702:[-]	target	-	chr20:16359702-16359703	T>C	PACA-CA	ICGC