Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865649:139865666:[+] chr13:61034512:61034531:[+] nonBSJ supported 5UTR

circRNA 5': AUACA--GAUCUUCCAGCUA 3'


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target  3':UUGUGUACCUGGAAGCUCGA 5'

 -16.20 13 RIC-seq
chrX:139865662:139865675:[+] chr13:61034525:61034536:[+] nonBSJ supported 5UTR

circRNA 5':AGCUAAUCCAUGUC 3'


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target  3':ACG-UUUUGUGUA 5'

 -3.40 1 RIC-seq
chrX:139866612:139866639:[+] chr13:61103286:61103320:[+] nonBSJ supported CDS

circRNA 5':AUAUCUCCAGGUCUUCCA-------GCAU-CUCCAG 3'


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target  3':AGUAGAGGUCCA-AAGGUGUAAAAACGUAUGAGGUA 5'

 -33.80 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:61103286:61103320:[+] target - chr13:61103295-61103296 G>A BTCA-JP ICGC
chr13:61103286:61103320:[+] target - chr13:61103296-61103297 C>T LINC-JP ICGC