Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865860:139865892:[+] chr20:44979003:44979053:[-] nonBSJ supported 3UTR

circRNA 5':ACGU-CUUCCA--CCAAA--UCCA----GGUC-------UUCCA--GUCAA 3'


            | | |||| ||| :|| |||| ::|| |:||


target  3':CGGACGAAGAUUCGGUAAACGGGACCGACCAGUGACGACGGGGACCCGGUG 5'

 -12.60 11 RIC-seq
chrX:139865861:139865892:[+] chr20:44979006:44979053:[-] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCA--CCAAA--UCCA----GGUC-------UUCCA--GUCAA 3'


            | |||| ||| :|| |||| ::|| |:||


target  3':AC-GAAGAUUCGGUAAACGGGACCGACCAGUGACGACGGGGACCCGGUG 5'

 -12.60 1 RIC-seq