Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866090:139866107:[+] chr5:36677007:36677024:[+] nonBSJ supported CDS

circRNA 5':AAAAGCCAUGUCUUC-CAG 3'


            ||||| | ||||| ||


target  3':AUUUCGA-AGAGAAGAGUA 5'

 -11.10 2 RIC-seq
chrX:139866496:139866521:[+] chr5:36679780:36679806:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAGAAA-AUCCACGUCUUCCA 3'


            |:|::|||: |:||| |||||||


target  3':ACGGGGGGUUAGUGUGGGUACAGAAGG 5'

 -30.70 2 RIC-seq
chrX:139866682:139866716:[+] chr5:36679765:36679799:[+] nonBSJ supported CDS

circRNA 5':CAG-CAUCUCUGUGUCUUCCAGCAUCUUCAU-GUCUU 3'


           ||: ||: :|::||||||||| |||:||: :||||


target  3':GUUAGUGUGGGUACAGAAGGU---AGAGGUGUUAGAAG 5'

 -30.30 2 RIC-seq