Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865938:139865979:[+] chr7:87483535:87483571:[-] nonBSJ supported CDS

circRNA 5':CUUCCUGAAGAUCCACGUCUU---CCAGAAAAUCCAUGUCUUCCA 3'


            |||||| |||| ||| ||:||:||


target  3':AAAGGACCGA-------AGAAUAUGGUAUCAAACA-ACGGAGGGA 5'

 -20.30 1 RIC-seq
chrX:139865966:139866008:[+] chr7:87483536:87483571:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCA 3'


            ||| || |||| ||||: || ||||||


target  3':AAGG-ACCGAAGAAUAU---GGUAUCAAA---CAACGGAGGGA 5'

 -21.80 1 RIC-seq
chrX:139865966:139866014:[+] chr7:87483536:87483574:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGUCUUC 3'


            ||| || |||| ||||: || |||||| ||||


target  3':AAGG-ACCGAAGAAUAU---GGUAUCAAA---CAACGGAGGG--AGAA 5'

 -22.00 19 RIC-seq