Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866314:139866353:[+] chr2:122096830:122096876:[-] nonBSJ supported 3UTR

circRNA 5':AUAGCUUCCGAAAAAUCCA--------GGUCUUC-CAGGAAA-UCCGUGU 3'


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target  3': GUCGAAGGACG--UAGGUUACGUCUCCCAGUCCCGUCUCCCCAGACACC 5'

 -27.00 2 RIC-seq
chrX:139865473:139865498:[+] chr2:122120759:122120785:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCC-GGACAAUCCAU-GUCUUCC 3'


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target  3':UCAGAAACACCCGA-AGGUCUCAGAAGU 5'

 -17.70 2 RIC-seq
chrX:139865617:139865652:[+] chr2:122218689:122218718:[-] nonBSJ supported CDS

circRNA 5': UGUCUUCCAAUAAUUUCAAGGUCUUC-CAUCAAAUAC 3'


            || ||:|||| ||| | ||| ||||| |||


target  3':GAC-GAGGGUU-----AGUA-C-GAACAGUAGUCUAUU 5'

 -14.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866314:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866314:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC