Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865662:139865695:[+] chr7:139248464:139248495:[-] nonBSJ supported 3UTR

circRNA 5':AGCUAAUCCA-UGUCUUCCAGAAAAAUCUGUGUCU 3'


            ||:|| ||||:| |||| | ||||


target  3':GUGGUUUUCUGACAGGAU-UCUUGU--GCGACAGU 5'

 -15.80 2 RIC-seq
chrX:139865694:139865715:[+] chr7:139248460:139248481:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCACCAAAUCCAAGUCUUC 3'


            |||||||||| |||:|


target  3':AAAGGUGGUUUUCUGACAGGAU 5'

 -19.20 32 RIC-seq
chrX:139866149:139866181:[+] chr7:139247093:139247144:[-] nonBSJ supported 3UTR

circRNA 5':UCCAUGUCUUCCA--GAAAAUC-------------------CUUGUCUUCCCUU 3'


            |||:|| ||| || ||: ||||||||


target  3':CGGUGCA--AGGAACCUGGACCACUGAAUCACAGCGGCCCAGAGGAGAAGGGAC 5'

 -22.90 20 RIC-seq
chrX:139866208:139866239:[+] chr7:139254085:139254114:[-] nonBSJ supported 3UTR

circRNA 5': GUC---UUCCAGGAAAUCCGUGUCUUCCAGCAAGU 3'


            |:| ::||||| |:|:| ||||:


target  3':UCGGUGCGGGGUCCA-----CGCGGCUAC-CGUUUU 5'

 -17.10 17 RIC-seq
chrX:139866210:139866239:[+] chr7:139254091:139254114:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAGGAAAUCCGUGUCUUCCAGCAAGU 3'


            |:||||| |:|:| ||||:


target  3':CGGGGUCCA-----CGCGGCUAC-CGUUUU 5'

 -15.80 1 RIC-seq
chrX:139866256:139866281:[+] chr7:139247453:139247473:[-] nonBSJ supported 3UTR

circRNA 5':AGCCAUGUCUUCCAGACUAUCCAUGU 3'


            ||||:|:|| ||| |: ||||||


target  3':GCGGUGCGGA--GUC-GG--GGUACA 5'

 -24.60 7 RIC-seq
chrX:139866295:139866317:[+] chr7:139250281:139250303:[-] nonBSJ supported 3UTR

circRNA 5':CUUGUC-UUCCCUCAAAUC-CAUAG 3'


            |||| ||| |||| ||||


target  3':AGACAUAAAGACAA-UUAGAGUAU 5'

 -5.90 17 RIC-seq
chrX:139866295:139866359:[+] chr7:139250281:139250327:[-] nonBSJ supported 3UTR

circRNA 5':CUUGUC-UUCCCUCAAAUC-CAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCA 3'


            |||| ||| |||| |||| ||||| ||:|| |::|:|||||


target  3':AGACAUAAAGACAA-UUAGAGUAU-------------GGUCCC----GUUCUCU--GUGCGGAAGGA 5'

 -25.30 2 RIC-seq
chrX:139866300:139866332:[+] chr7:139252714:139252737:[-] nonBSJ supported 3UTR

circRNA 5': CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCA 3'


            |||||| |||:||| |||


target  3':UGAAGGGCU--------UCGGAGGAGUAG-AGG 5'

 -22.10 1 RIC-seq
chrX:139866332:139866377:[+] chr7:139250294:139250327:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCUU---CCAGGAAAUCCGUGUCUUCCAGCAAAUC-CACGUCUUCCA 3'


            |:|||: ||||| |||| ||||:|||||


target  3':AUUAGAGUAUGGUCC----------------CGUUCUCUGUGCGGAAGGA 5'

 -29.70 14 RIC-seq
chrX:139866371:139866398:[+] chr7:139252714:139252735:[-] nonBSJ supported 3UTR

circRNA 5':UCUUCCAACAAAGCCAUGUCUUCCAUCA 3'


            ||||| ||||| ||:| ||||


target  3':UGAAGGGC--UUCGG---AGGA-GUAGA 5'

 -19.00 14 RIC-seq
chrX:139866382:139866425:[+] chr7:139251825:139251865:[-] nonBSJ supported 3UTR

circRNA 5':AGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGU 3'


            || ||| |:| :|:|||||| || || |||


target  3':ACGUAAAUUUAGGACAA--AGUGGCGGAAGGUAAGA-GAUCACC 5'

 -22.00 10 RIC-seq
chrX:139866385:139866425:[+] chr7:139251826:139251865:[-] nonBSJ supported 3UTR

circRNA 5': CAUGUCU-UCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGU 3'


            ||| ||| |:| :|:|||||| || || |||


target  3':CGUAAAUUUAGGACAA--AGUGGCGGAAGGUAAGA-GAUCACC 5'

 -20.90 1 RIC-seq
chrX:139866419:139866450:[+] chr7:139251823:139251855:[-] nonBSJ supported 3UTR

circRNA 5':CUUGUGUCU---UCCAACAAAGGUACGUCUUCCAA 3'


            |||::| ||| ||:||||||


target  3':AAACGUAAAUUUAGGACAAAGUG--GCGGAAGGUA 5'

 -18.20 10 RIC-seq
chrX:139866420:139866440:[+] chr7:139248047:139248069:[-] nonBSJ supported 3UTR

circRNA 5':UUGUGUCUUCCAACA--AAGGUA 3'


            |||| |: ||| ||||:


target  3':CACACUGGUGGUCAGAGUUCCGA 5'

 -15.30 2 RIC-seq
chrX:139866498:139866505:[+] chr7:139256043:139256049:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAGA 3'


            ||||||


target  3':CGAGGUC 5'

 -7.70 1 RIC-seq
chrX:139866513:139866541:[+] chr7:139256023:139256049:[-] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACCAAGCCAUGUCUUCCAGA 3'


            |:|:: || | :|||||


target  3':UCGGGGCCCGCUC-CGACUCUCGAGGUC 5'

 -11.90 11 RIC-seq
chrX:139866576:139866602:[+] chr7:139254081:139254105:[-] nonBSJ supported 3UTR

circRNA 5':ACUAAGCUACGUCUUCCAACAAAUCCA 3'


            ||||||:|||:| ||| ||


target  3':GGAUUCGGUGCGG--GGUCCACGCGGC 5'

 -23.00 1 RIC-seq
chrX:139866576:139866605:[+] chr7:139254081:139254108:[-] nonBSJ supported 3UTR

circRNA 5':ACUAAGCUACGUCUUCCAACAAAUCC-AUGU 3'


            ||||||:|||:| ||| || |||


target  3':GGAUUCGGUGCGG--GGUCCACGCGGCUAC 5'

 -23.60 19 RIC-seq
chrX:139866620:139866643:[+] chr7:139246991:139247011:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCU 3'


            ||| |:||: :|:|


target  3':GCCACUUCCUUGUGUUG--UCUG 5'

 -8.90 1 RIC-seq
chrX:139866620:139866643:[+] chr7:139246991:139247012:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCU 3'


            ||| |:|| | |||: |


target  3':GCCACUUCCUUGU-GUUGUCUGG 5'

 -10.50 15 RIC-seq
chrX:139866654:139866693:[+] chr7:139257099:139257135:[-] nonBSJ supported 3UTR

circRNA 5': GCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGU 3'


            ||| || || || ||| |||:||:


target  3':CCGA-CAACUGGGAA-AGCUCA--AGACCUUUUUAGGGAUU 5'

 -10.80 8 RIC-seq
chrX:139865762:139865768:[+] chr7:139268672:139268678:[-] nonBSJ supported CDS

circRNA 5':AGUGUCU 3'


            |||||


target  3':CCACAGU 5'

 -7.00 1 RIC-seq
chrX:139865776:139865807:[+] chr7:139268652:139268678:[-] nonBSJ supported CDS

circRNA 5':AGAAA-UCCAGGUCUUCCAGUCAAUCAGUGUCU 3'


            || |||||| ||:|| |||||


target  3':ACUAAGAGGUCC-GAGGGGAAC-----CACAGU 5'

 -23.00 20 RIC-seq
chrX:139865783:139865807:[+] chr7:139268661:139268678:[-] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCAGUCAAUCAGUGUCU 3'


            ||| ||:|| |||||


target  3': UCC-GAGGGGAAC-----CACAGU 5'

 -14.00 15 RIC-seq
chrX:139865784:139865807:[+] chr7:139268662:139268678:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCAGUGUCU 3'


            || ||:|| |||||


target  3': CC-GAGGGGAAC-----CACAGU 5'

 -12.30 2 RIC-seq
chrX:139866407:139866418:[+] chr7:139268593:139268605:[-] nonBSJ supported CDS

circRNA 5':UCUUC-CA-GCCUA 3'


            |||| | ||||


target  3': GAAGCGACCGGAC 5'

 -7.70 13 RIC-seq
chrX:139866407:139866430:[+] chr7:139268593:139268613:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGCCUACUUGUGUCUUCC 3'


            |||| || |:|| || |||


target  3': GAAG--CGACCGGACCCAAAAGU 5'

 -8.60 1 RIC-seq
chrX:139866407:139866439:[+] chr7:139268593:139268615:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGCCUACUUGUGUCUUCCAACAAAGGU 3'


            |||| || |:|| || ||| |||


target  3': GAAG--CGACCGGACCCAAAAG------UCC 5'

 -8.90 11 RIC-seq
chrX:139866459:139866485:[+] chr7:139315915:139315942:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGG-UAUGUCU--UCCA 3'


            ||| ||| ||||||| |||| |||


target  3':UCAG-AGG-UGUUUCCUAUACCACUCAGGC 5'

 -21.60 1 RIC-seq
chrX:139866459:139866494:[+] chr7:139315915:139315952:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGG-UAUGUCU--UCCAACAAA-GGUA 3'


            ||| ||| ||||||| |||| ||| |||


target  3':UCAG-AGG-UGUUUCCUAUACCACUCAGGCACAGUGCCAA 5'

 -23.70 1 RIC-seq
chrX:139866459:139866503:[+] chr7:139315915:139315960:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGG-UAUGUCU--UCCAACAAA-GGUACGUCUUCCA 3'


            ||| ||| ||||||| |||| ||| ||| ||


target  3':UCAG-AGG-UGUUUCCUAUACCACUCAGGCACAGUGCCAACUUUUUGG 5'

 -25.20 1 RIC-seq
chrX:139866459:139866512:[+] chr7:139315915:139315960:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGG-UAUGUCU--UCCAACAAA-GGUACGUCUUCCAGAAAAUCCA 3'


            ||| ||| ||||||| |||| ||| ||| ||||| ||


target  3':UCAG-AGG-UGUUUCCUAUACCACUCAGGCACAGUGCCAA---------CUUUUUGG 5'

 -26.20 29 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866295:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866300:139866332:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866576:139866602:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866576:139866605:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC