Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866331:139866372:[+] chr12:53435139:53435181:[+] nonBSJ supported 3UTR

circRNA 5':CAGGUCUUCCAGGAAA----UCCGUGUCUUCCAGCAAAUCCA-CGUC 3'


            ||| ||:|||: ||| |||| || ||||| |:|


target  3':UUCC-GAGGGUUAAAUUGACAGGGACAG--GGAUAAAUAGGUAGUA 5'

 -27.20 1 RIC-seq
chrX:139866331:139866373:[+] chr12:53435138:53435181:[+] nonBSJ supported 3UTR

circRNA 5':CAGGUCUUCCAGGAAA----UCCGUGUCUUCCAGCAAAUCCA-CGUCU 3'


            ||| ||:|||: ||| |||| || ||||| |:||


target  3':UUCC-GAGGGUUAAAUUGACAGGGACAG--GGAUAAAUAGGUAGUAG 5'

 -31.20 7 RIC-seq
chrX:139866331:139866374:[+] chr12:53435137:53435181:[+] nonBSJ supported 3UTR

circRNA 5':CAGGUCUUCCAGGAAA----UCCGUGUCUUCCAGCAAAUCCA-CGUCUU 3'


            ||| ||:|||: ||| |||| || ||||| |:||:


target  3':UUCC-GAGGGUUAAAUUGACAGGGACAG--GGAUAAAUAGGUAGUAGG 5'

 -31.70 23 RIC-seq