Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865363:139865398:[+] chr18:77455994:77456026:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUC 3'


            |||| || || ||| || || ||||


target  3':GCCAGC-GGCACCUGUCGCCGU---GGACGACGAAGG 5'

 -20.10 11 RIC-seq
chrX:139865373:139865396:[+] chr18:77456027:77456056:[+] nonBSJ supported CDS

circRNA 5':ACAACUCCGG------GUCUUCCAGCGACU 3'


            ||||||||| || ||| |||


target  3':AGUUGAGGCCGUGCGACACGUGGUACCUGU 5'

 -21.00 2 RIC-seq
chrX:139865373:139865408:[+] chr18:77455993:77456056:[+] nonBSJ supported CDS

circRNA 5':ACAACUCCG----------------------GGUCUUC-----CAGCG--ACUUCAAGUCUUCCA 3'


            |||||||| |||| :| ||||| ||:| | |||||


target  3':AGUUGAGGCCGUGCGACACGUGGUACCUGUGCCAGCGGCACCUGUCGCCGUGGACGAC-GAAGGG 5'

 -29.60 1 RIC-seq
chrX:139865373:139865427:[+] chr18:77455993:77456056:[+] nonBSJ supported CDS

circRNA 5':ACAACUCCGG------GUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGU--------CUUCCA 3'


            ||||||||| || ||| ||| ||| || ||: |||||


target  3':AGUUGAGGCCGUGCGACACGUGGUACCUGUGC--CAGC-GGCACCUGUCG--CCGUGGACGACGAAGGG 5'

 -29.70 10 RIC-seq
chrX:139865373:139865427:[+] chr18:77456018:77456056:[+] nonBSJ supported CDS

circRNA 5':ACAACUCCGG------GUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCA 3'


            ||||||||| || ||| ||| |||| ||


target  3':AGUUGAGGCCGUGCGACACGUGGUACCUGUG---------------------CCAGC-GGC 5'

 -25.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:77455993:77456056:[+] target - chr18:77456018-77456019 C>T COCA-CN ICGC
chr18:77455993:77456056:[+] target - chr18:77456022-77456023 G>A BTCA-JP ICGC
chr18:77455994:77456026:[+] target - chr18:77456018-77456019 C>T COCA-CN ICGC
chr18:77455994:77456026:[+] target - chr18:77456022-77456023 G>A BTCA-JP ICGC
chr18:77456018:77456056:[+] target - chr18:77456022-77456023 G>A BTCA-JP ICGC