Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865414:139865454:[+] chr14:55255967:55256000:[+] nonBSJ supported 3UTR

circRNA 5':CUCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCA 3'


            ||| ||: :|||| |:|| |||


target  3':AAGUACCGUCAUGAGAAAGGGGAC---AGGGGCA---AGG 5'

 -16.40 3 RIC-seq
chrX:139865419:139865441:[+] chr14:55255992:55256014:[+] nonBSJ supported 3UTR

circRNA 5':GGUCUUCCAGAUAA-UCCUGAGCU 3'


            ||||:| || || ||


target  3':ACAGAGGAUAGAGAAAGUAC-CGU 5'

 -10.00 1 RIC-seq
chrX:139865419:139865462:[+] chr14:55255971:55256014:[+] nonBSJ supported 3UTR

circRNA 5':GGUCUUCCAGAUAA-UCCUGAGCUUCCAGAAAAUCCACAUCUUCC 3'


            ||||:| || || || :|| ||::|


target  3':ACAGAGGAUAGAGAAAGUAC-CGUCAUGAGAAAGGGGACAGGGGC 5'

 -15.90 4 RIC-seq
chrX:139865419:139865472:[+] chr14:55255967:55256014:[+] nonBSJ supported 3UTR

circRNA 5':GGUCUUCCAGAUAA-UCCUGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCA 3'


            ||||:| || || || ||| | |:|| |||


target  3':ACAGAGGAUAGAGAAAGUAC-CGUCAUGAGAA-AGG-GGACAGGGGCA---AGG 5'

 -17.60 26 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:55255967:55256000:[+] target - chr14:55255997-55255998 T>C PACA-CA ICGC
chr14:55255967:55256014:[+] target - chr14:55255997-55255998 T>C PACA-CA ICGC
chr14:55255971:55256014:[+] target - chr14:55255997-55255998 T>C PACA-CA ICGC
chr14:55255992:55256014:[+] target - chr14:55255997-55255998 T>C PACA-CA ICGC