Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865775:139865808:[+] chr4:79080832:79080870:[+] nonBSJ supported Intron

circRNA 5':AAGAAAUCCAGGUCUU-CCA-GUCAAUCAGU---GUCUU 3'


            |||||| ||| ||| || :||| ||||:


target  3':AUCUUUACC-CCAAAGUGGUACAACCGGUCCGACCAGAGC 5'

 -15.40 1 KARR-seq
chrX:139865769:139865834:[+] chr4:79080842:79080903:[+] nonBSJ supported Intron

circRNA 5':UCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAU---------CCAGGUCUUCCAGU 3'


            ||| ||| |:|| |:|||| ||| |||||| ||| || ||||


target  3':UGGU---------GGUACGGAC---CGGUUAAAAACAUAAAAAUCAUCUUUACCCCAAAGUGGUACAACCGGUC 5'

 -21.70 1 KARR-seq
chrX:139865775:139865809:[+] chr4:79080832:79080870:[+] nonBSJ supported Intron

circRNA 5':AAGAAAUCCAGGUCUU-CCA-GUCAAUCAGU---GUCUUC 3'


            |||||| ||| ||| || :||| ||||:


target  3':AUCUUUACC-CCAAAGUGGUACAACCGGUCCGACCAGAGC 5'

 -15.70 1 KARR-seq
chrX:139866711:139866734:[+] chr4:79461968:79462008:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAACAACUACC-------------------CAGUCU 3'


            |:| |||| ||| ||| |||:|


target  3':UCGGU-GGUUUUUG-UGGUCUUCAUCUUCGUACUAACGUCGGU 5'

 -14.70 1 KARR-seq