Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866025:139866104:[+]	chr1:205689653:205689701:[-]	nonBSJ supported	CDS	circRNA 5':ACGUCUUCCCAACAAUCCAAGUCUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUC 3' \| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| :\|:\|\|:\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|: target 3': GGAGAAG--------------------------AACA-AGAAGGAGUGACGGGUGUAGAAGGUAC--UC-GUAGAGAGA 5'	-41.40	1	KARR-seq
chrX:139866045:139866089:[+]	chr1:205689655:205689689:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAA 3' \|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| :\|:\|\|:\|\|\|\|\|\|\| target 3': AGAAG--------AACA-AGAAGGAGUGACGGGUGUAGAAGGUA 5'	-33.70	1	KARR-seq
chrX:139866045:139866104:[+]	chr1:205689654:205689701:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUC 3' \|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| :\|:\|\|:\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|: target 3':GAGAAG--------AACA-AGAAGGAGUGACGGGUGUAGAAGGUAC--UC-GUAGAGAGA 5'	-41.00	2	KARR-seq
chrX:139866125:139866157:[+]	chr1:205719080:205719111:[-]	nonBSJ supported	CDS	circRNA 5':AUGGCCUC-CAGGUCUUCCAGACUA--UCCAUGUCU 3' \|\|:\|\|\| \|\|\|\|:\| \|\|\| \|\| \|\|\|\| target 3':GACUGGACUGUCCGGCG---CUGUACAAGCGACAG 5'	-23.30	1	KARR-seq