Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866520:139866560:[+]	chr1:46828803:46828850:[+]	nonBSJ supported	Exon	circRNA 5':CAACCA-AGCCAU-GU-CUUCCAGAAAAUCCACGUCU----UCCAGAA 3' \|\|\|\| \|\|\| \|\| \|:\|\|\| \|\| \|\|\| \|\|\| :\|\|\|:\| target 3':AUUGGAGUCGAUUUCAGGGAGGAGUUGACUGUGGAGAUUAUGGGUUUA 5'	-26.30	1	KARR-seq
chrX:139866544:139866602:[+]	chr1:46828816:46828891:[+]	nonBSJ supported	Exon	circRNA 5':AUCCAC-GUCUUCCAGAAAAUAUAUGUC--UUCCA------------ACUA-AGCUACG---UCUUC-CAACAAAU-CCA 3' \|\|\|\| \|:\|:\|\| \|:\| \|\|\|: \|:\|\|\| \|\|: \|\|\|\|\| :\|\|:\| \|\|\|\| \|: \|\| target 3': AGGUCCCGGGAGUUAA--UGU-UACGUUUAGGGUUUUCUUCCGAAUUGGAGUCGAUUUCAGGGAGGAGUUGACUGUGGA 5'	-28.60	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866544:139866602:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC