Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866565:139866594:[+] chr9:125449376:125449403:[+] nonBSJ supported Exon

circRNA 5':UAUGUCUUCCAACUAAGCUACGUCUUCCAA 3'


            ||:|||||| || ||| || :|||


target  3':UUAUAGAAGG--GAAACGACUAAGUGGGUA 5'

 -19.20 2 KARR-seq
chrX:139866565:139866604:[+] chr9:125449338:125449403:[+] nonBSJ supported Exon

circRNA 5':UAUGUCUUCCAACUAAGCUACGUCUUCCAA----------------------------CAAAUCCAUG 3'


            ||:|||||| || ||| || :||| |||| ||||


target  3':UUAUAGAAGG--GAAACGACUAAGUGGGUAAGAACAACGAAGUGUUCUCAGACUUUACGUUUUGGUAG 5'

 -21.80 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:125449338:125449403:[+] target - chr9:125449357-125449358 C>A LAML-KR ICGC
chrX:139866565:139866594:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866565:139866604:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC