Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865607:139865625:[+] chr17:4849982:4850003:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCAUGUC---UUCCA 3'


            |:| |||||||: ||||


target  3':GCUUCUAGGUACGAUUUAAGGG 5'

 -15.60 1 KARR-seq
chrX:139865607:139865647:[+] chr17:4849982:4850007:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCAUGUC---UUCCAAUAAUUUCAAGGUCUUCCAUCA 3'


            |:| |||||||: |||| |||||


target  3':GCUUCUAGGUACGAUUUAAGG-----------------GGUAG 5'

 -19.30 4 KARR-seq
chrX:139865649:139865677:[+] chr17:4849979:4850008:[-] nonBSJ supported CDS

circRNA 5':AUACAGAUCUUCCA-GCUAA--UCCAUGUCUU 3'


            ||| || |||| ||||| ||| :||:


target  3':CAUG-CUUCUAGGUACGAUUUAAGGGGUAGG 5'

 -18.50 2 KARR-seq