Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866373:[+] chr11:62609097:62609131:[-] nonBSJ supported 5UTR

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCU 3'


            || ||| |||| |||| ||: || |||| ||| |||


target  3':ACGU-GGC-------------AAGGACCUU----CAU-GA----CGUUAUGGUCCAGC 5'

 -22.30 2 KARR-seq
chrX:139866295:139866352:[+] chr11:62609105:62609188:[-] nonBSJ supported 5UTR

circRNA 5': CUUGUCUUCCCU-CAAAUCCAU-------------------------AGCUUCCGAAAAAUCCAGGUCU----UCCAGGAAAUCCGUG 3'


            |:|| || ||| ||| ||| ||| |||| ||: |||| :||||||:|


target  3':AGGACCUUCAUGACGUUAUGGUCCAGCUACGCACCUCACCUGCCUCGUUCG-AGGAUA---AGGUAGAGGAUAAAGGU-UUUUAGGUAA 5'

 -28.60 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866295:139866352:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866373:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC