Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866157:139866198:[+] chr1:160267488:160267529:[-] nonBSJ supported CDS

circRNA 5': UUCCAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCUUCCAA 3'


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target  3':AAGGGUCGUCAA-GAACAGUAGGUCACGAAACCGACGAAGGUC 5'

 -29.90 5 KARR-seq
chrX:139866157:139866179:[+] chr1:160267488:160267510:[-] nonBSJ supported CDS

circRNA 5': UUCCAGAAAAUCCUUGUCUUCCC 3'


            |:|||| |||||| |||


target  3':AAGGGUCGUCAA-GAACAGUAGGU 5'

 -19.50 2 KARR-seq
chrX:139866168:139866198:[+] chr1:160267499:160267529:[-] nonBSJ supported CDS

circRNA 5':CCUUGUCUUCCCUUAAAUCUAUAGCUUCCAA 3'


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target  3':AGAACAGUAGGUCACGAAACCGACGAAGGUC 5'

 -23.20 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:160267488:160267529:[-] target - chr1:160267522-160267523 G>A BTCA-JP ICGC
chr1:160267499:160267529:[-] target - chr1:160267522-160267523 G>A BTCA-JP ICGC